Epigenome of bread wheat mapped to piece together its genetic heritage

Published in Genome Research, based on a novel method developed by Earlham Institute, UK, an international research team have uncovered the hidden genetic secrets that give wheat its remarkable ability for local adaptation – revealing a previously untapped resource for breeding better, more resilient wheat.

Globally, wheat, together with maize and rice, provides the most human nutrition. It can thrive in a whole range of different environments, even within a similar geographical region.

Exploring one hundred different wheat lines worldwide, the research team led by the Earlham Institute in collaboration with HelmholtzZentrum München, University of Liverpool and the John Innes Centre have revealed a trove of epigenetic variation that was previously unknown to current genotyping methods.

The new findings link crop evolution and phenotypic change to agricultural conditions – allowing us to protect future yields with a climate resistant armour through new breeding methods – contributing to the success of this global crop as well as significant implications for the wheat community.

With DNA, it’s not always about the sequence of As, Ts, Gs and Cs. Although they contain the vital code that lets us make proteins, there are many other aspects to a genome than just the gene sequences.

One aspect is epigenetics – changes in how genes are expressed. Extra to the DNA sequence, the individual letters might come attached with a ‘methyl group’. Methylation is very important because it means that genes can be turned off, or the way DNA is stored can change, changing the way genetic information is read.

This is important because these changes can happen due to the environment, but are still inherited. This means, in certain conditions, if an epigenetic change happens that is beneficial, this can be passed on to the next generation.

The research team found geographical patterns in these epigenetic changes between the 100 landraces of wheat studied, which suggests that these changes have arisen due to environmental conditions in those local areas.

This is exciting, because it means that breeders have an hidden tool up their wheat sleeve. Currently, it’s all about SNPs – single changes in a DNA sequence that have an effect on disease or environmental resistance, for example. Now, even if the DNA sequence is the same, there might be subtle changes at the epigenetic level that we can use to improve how plants respond to local conditions.

Essentially, there are more tools to enable farmers to keep on growing the best possible crop for their local environment.

Group Leader Professor Anthony Hall at the Earlham institute, said: “We are very proud of our groundbreaking piece of fundamental work indicating that DNA methylation offers a broad and stable source of variation for wheat breeders.

“Our next step is to translate this fundamental work on DNA methylation to a technology that is transformative, relevant and accessible to wheat breeders for the development of new cultivars.”

 

 

Get Our E-Newsletter - breaking news to your in-box once a week
Will be used in accordance with our Privacy Policy
Share.

About The Author

John Swire - Deputy editor of Agronomist and Arable Farmer as well as responsibility for the Agronomist and Arable Farmer and Farm Business websites. After 17 years milking cows on the family farm John started writing about agriculture in 1998 and has since written for a variety of publications and has developed a wide circle of contacts within the industry. When not working John is a season ticket holder at Stoke City and also of late has become a fitness freak, listing cycling, swimming and walking as his exercises of choice.